Construction of specific primers for identification of Leuconostoc mesenteroides subspecies
https://doi.org/10.29235/1817-7204-2020-58-2-244-256
Abstract
Bacteria p. Leuconostoc is a technologically important group of lactic acid bacteria that is part of starter cultures for production of various dairy products. Two species are most important in the dairy industry: Leuconostoc lactis and Leuconostoc mesenteroides, which includes three subspecies: dextranicum, mesenteroides and cremoris. The main problem of identifying representatives of the p. Leuconostoc that these microorganisms can often be misidentified as enterococci or lactobacilli. In comparison with traditional methods of species detection, the establishment of species identity using PCR is characterized by universality, a deeper level of species differentiation, high reproducibility and reliability. The article presents the results of designing specific primers for Leuconostoc mesenteroides ssp. mesenteroides and Leuconostoc mesenteroides ssp. dextranicum. The specificity of developed primers was confirmed by in silico testing using available Leuconostoc mesenteroides genomic sequences, and experimentally using DNA samples of Leuconostoc mesenteroides clear cultures. The taxonomic affiliation of 5 isolates of leuconostocci isolated from natural samples was established using the developed primers. Methodological Instructions have been developed that regulate the procedure for determining the taxonomic position of bacteria of genus Leuconostoc to a subspecies. Methodological guidelines for identification of leuconostocs will be used in collections of industrial microorganisms for the accurate identification of deposited strains.
Keywords
About the Authors
A. M. BirukBelarus
Alena M. Biruk - Ph.D. (Agricultural)
Partizanskiy av. 172, 220075, Minsk
N. N. Furik
Belarus
Natallia N. Furik - Ph.D. (Engineering)
Partizanskiy av. 172, 220075, Minsk
Yu. S. Tarashkevich
Belarus
Yuliya S. Tarashkevich - Postgraduate Student
Partizanskiy av. 172, 220075, Minsk
T. A. Savelyeva
Belarus
Tamara A. Savelyeva - Ph.D. (Veterinary)
Partizanskiy av. 172, 220075, Minsk
References
1. Khusainov I. A. Current ideas about the biosynthesis of bacterial exopolysaccharides. Vestnik Kazanskogo tekhnologicheskogo universiteta [Bulletin of the Kazan Technological University], 2014, vol. 17, no. 5, pp. 167-172 (in Russian).
2. Stepanenko P. P. Microbiology of milk and dairy products. Sergiev Posad, Vse dlya Vas - Podmoskov’e Publ., 1999. 415 p (in Russian).
3. Whitman W., Goodfellow M., Kämpfer P., Busse H.-J., Trujillo M., Ludwig W., Suzuki K.-I. (eds.). Bergey’s manual of systematic bacteriology. Vol. 5. The Actinobacteria. 2nd ed. New York, Springer, 2012. 2083 p. https://doi.org/10.1007/978-0-387-68233-4
4. Rosi N. L., Mirkin C. A. Nanostructures in biodiagnostics. Chemical Reviews, 2005, vol. 105, no. 4, pp. 1547-1562. https://doi.org/10.1021/cr030067f
5. Wang X., Lu M., Wang S., Fang Y., Wang D., Ren W., Zhao G. The atmospheric and room-temperature plasma (ARTP) method on the dextranase activity and structure. International Journal of Biological Macromolecules, 2014, vol. 70, pp. 284-291. https://doi.org/10.1016/j.ijbiomac.2014.07.006
6. Otts D. R., Day D. F. Dextransucrase secretion in Leuconostoc mesenteroides depends on the presence of a transmembrane proton gradient. Journal of Bacteriology, 1988, vol. 170, no. 11, pp. 5006-5011. https://doi.org/10.1128/jb.170.11.5006-5011.1988
7. Erten H. Fermentation of glucose and fructose by Leuconostoc mesenteroides. Turkish Journal of Agriculture and Forestry, 2000, vol. 24, no. 4, pp. 527-532.
8. Gudkov A. V. Cheese making: technological, biological and physico-chemical aspects. Moscow, DeLi print Publ., 2003. 799 p. (in Russian).
9. Kihal M., Prevost H., Henni D. E., Benmechernene Z., Diviès C. Carbon dioxide production by Leuconostoc mesenteroides grown in single and mixed culture with Lactococcus lactis in skimmed milk. World Journal of Dairy and Food Sciences, 2007, vol. 2, no. 2, pp. 62-68.
10. Shergin N. A. Improving the quality of Dutch-type cheeses by improving the selection of Leuconostoc in starter cultures. Ph.D. Thesis. Uglich, 1985. 246 p. (in Russian).
11. Dundar H., Salih B., Bozoğlu F. Purification and characterization of a bacteriocin from an oenological strain of Leuconostoc mesenteroides subsp. cremoris. Preparative Biochemistry and Biotechnology, 2016, vol. 46, no. 4, pp. 354-359. https://doi.org/10.1080/10826068.2015.1031395
12. Hechard Y., Derijard B., Letellier F., Cenatiempo Y. Characterization and purification of mesentericin Y105, an anti-Listeria bacteriocin from Leuconostoc mesenteroides. Journal of General Microbiology, 1992, vol. 138, no. 12, pp. 2725-2731. https://doi.org/10.1099/00221287-138-12-2725
13. Aziz R. A., Salman J. A. S., Hachim O. A. H. Antibacterial effect of bacteriocin from Leuconostoc mesenteroides ssp. cremoris against diarrheal causative bacteria. European Journal of Biomedical and Pharmaceutical Sciences, 2016, vol. 3, no. 11, pp. 114-118.
14. Sorokina N. P., Kucherenko I. V. Production of fermented milk products and cheeses: composition and properties of starters microflora. Molochnaya promyshlennost’ = Dairy Industry, 2013, no. 6, pp. 38–40 (in Russian).
15. Sorokina N. P., Kuraeva E. V., Kucherenko I. V. Bacterial starters for cheese production. Syrodelie i maslodelie = Cheesemaking and Oilmaking, 2016, no. 4, pp. 26-31 (in Russian).
16. Solov’eva I. V., Tochilina A. G., Belova I. V., Novikova N. A., Ivanova T. P. The lactobacillus biological properties. Prospects of express-methods nucleic acid amplification for the foods, food supplements and drugs on its basis quality control. MediAl’ = MediAl, 2014, no. 2 (12), pp. 29-44 (in Russian).
17. Tochilina A. G. Biochemical and molecular genetic identification of bacteria of Lactobacillus genus. Ph.D. Thesis. Nizhny Novgorod, 2009. 148 p. (in Russian).
18. Chentouf H. F., Zineb B. Isolation and identification of Leuconostoc mesenteroides producing bacteriocin isolated from Algerian raw camel milk. African Journal of Microbiology Research, 2013, vol. 7, no. 23, pp. 2961-2969. https://doi.org/10.5897/ajmr2013.5753
19. Dimic G. Characteristics of the Leuconostoc mesenteroides subsp. mesenteroides strains from fresh vegetables. Acta Periodica Technologica, 2006, no. 37, pp. 3-11. https://doi.org/10.2298/apt0637003d
20. De Man J. C., Rogosa M., Sharpe M. E. A medium for the cultivation of Lactobacilli. Journal of Applied Bacteriology, 1960, vol. 23, no. 1, pp. 130-135. https://doi.org/10.1111/j.1365-2672.1960.tb00188.x
21. Negi M. S., Rajagopal J., Chauhan N., Cronn R., Lakshmikumaran M. Length and sequence heterogeneity in 5S rDNA of Populus deltoides. Genome, 2002, vol. 45, no. 6, pp. 1181-1188. https://doi.org/10.1139/g02-094
22. Marmiroli N., Peano C., Maestri E. Advanced PCR techniques in identifying food components. Food authenticity and traceability. Boca Raton, Cambridge, 2003, pp. 3-33. https://doi.org/10.1533/9781855737181.1.3
23. Schillinger U., Böhringer B., Wallbaum C., Caroline L., Gonfa A., Huch M., Holzapfel W. H., Franz C. M. A. P. A genus-specific PCR method for differentiation between Leuconostoc and Weissella and its application in identification of heterofermentative lactic acid bacteria from coffee fermentation. FEMS Microbiology Letters, 2008, vol. 286, no. 2, pp. 222-226. https://doi.org/10.1111/j.1574-6968.2008.01286.x
24. Evdokimova O. V., Myamin V. E., Valentovich L. N. Identification of Bacillus pumilus bacteria by using species-specific PCR assay. Molekulyarnaya i prikladnaya genetika: sbornik nauchnykh trudov [Molecular and Applied Genetics: a collection of scientific papers]. Minsk, 2016, vol. 21, pp. 53-63 (in Russian).
25. Lee H.-J., Park S.-Y., Kim J. Multiplex PCR-based detection and identification of Leuconostoc species. FEMS Microbiology Letters, 2000, vol. 193, no. 2, pp. 243-247. https://doi.org/10.1111/j.1574-6968.2000.tb09431.x
26. Moschetti G., Blaiotta G., Villani F., Coppola S. Specific detection of Leuconostoc mesenteroides subsp. mesenteroides with DNA primers identified by randomly amplified polymorphic DNA analysis. Applied and Environmental Microbiology, 2000, vol. 66, no. 1, pp. 422-424. https://doi.org/10.1128/aem.66.1.422-424.2000
27. Jang J., Kim B., Lee J., Han H. A rapid method for identification of typical Leuconostoc species by 16S rDNA PCR-RFLP analysis. Journal of Microbiological Methods, 2003, vol. 55, no. 1, pp. 295-302. https://doi.org/10.1016/s0167-7012(03)00162-3
28. Bendimerad N., Kihal M., Berthier F. Isolation, identification, and technological characterization of wild leuconostocs and lactococci for traditional Raib type milk fermentation. Dairy Science and Technology, 2012, vol. 92, no. 3, pp. 249-264. https://doi.org/10.1007/s13594-012-0063-8